About
Bioinformatics and AI-assisted drug discovery PhD Student at UCL. Funded by the MRC and in the iCase DTP, my industrial partner is Immunocore, an Oxford-based biotech company. I have extensive experience in protein biochemistry and cancer research. Proficient in developing machine learning models focusing on antibody and TCR-based drug engineering and discovery.
Skills
Research Interests
Knowledge Graphs for Protein Protein Ineractions
Different Knowledge Graph Embeddings for protein representation and discovering interactions through edge detection.
Experience
ConceptionX (Ongoing)
Participant of the ConceptionX start-up accelerator.
Turing Data Study Group (May 2023)
During the Data Study Group (DSG) with the Environmental Investigation Agency, our team developed a tool to identify individual tigers from their stripe patterns using a database of tiger skin images linked to illegal wildlife traders. Eager to apply my programming skills in a novel context, I chose this computer-vision project to explore cross-disciplinary learning. I contributed to the image preprocessing pipeline, normalizing stripe patterns by mapping images into 3D space, and developed a method for embedding image data for model training. Additionally, I expanded the dataset using stylegan3 to fine-tune artificially produced images of tiger stripe patterns.
In.vent Diagnostica (September 2020 - January 2021)
Helped establish new protein array project that formed the new engine gmbh. As the sub-company of the biotech company in.vent diagnostica was just being formed, my tasks were varied and I had the opportunity to gather experience in many domains in this fast-paced environment . The focus was developing and testing new protein array products for diagnosis and treatment- monitoring via biomarker identification (cancer, autoimmune diseases). I also took on a client interfacing role, responding to queries and requests regarding data interpretation and our technology. I was also a company representative at Analytica Conference and Medica Conference and managed to secure two new clients. http://www.engine-gmbh.de/company-about.html
UCL Cancer Institute (June 2019 - May 2020)
CAR-T cell treatment for Acute Myeloid Leukaemia. During my time at the lab I primarily worked on a project researching small drug molecules for MCT-1 inhibition, which were used for exploring their impact on CAR T cells, specifically their expansion and interaction with tumor cells. The effectivity of targeting lactate metabolism via MCT-1 in combination with CAR T cell therapies against B-cell malignancies was explored. My main tasks in the lab included cloning (including plasmid design), cell-culturing, blood sample handling, T-cell isolation and various immuno-fluorescent techniques. I received training in flow-cytometry and experiment data analysis.
Projects
Here is a summary of projects I have worked on throughout my PhD and side-projects I have pursued.
Read More© Lilian Denzler. All Rights Reserved. Last Updated: 11/10/23